Neuroimaging Software

SPM(external link)

  • SPM12(external link) r7219 16-Nov-2017 (start with spm12 or spm12_7219 from a matlab2013a-prompt; an older release can be run via spm12_6906)
  • SPM8(external link) r6313 02-Mar-2015 (start with spm8 or spm8_6313 from a matlab2008a-prompt; older releases can be run via spm8_5236, spm8_4667, spm8_4290 or spm8_4010)
  • SPM5(external link)
  • SPM2(external link)
How to use Matlab & SPM on psyserv01

SPM/Matlab toolboxes in use

Other software

AFNI(external link) 19.3.08 OpenMP
FreeSurfer(external link) v6.0.0
  • add the flag -parallel to recon-all to enable OpenMP support!
FSL(external link) 6.0.1 & FSLeyes(external link) 0.27.3+build0

BrainVISA(external link) 4.5.0 (execute brainvisa_setup before using BrainVISA-commands!)
Caret(external link) 5.65
ICA-AROMA(external link) v0.4.3-beta
lipsia(external link) 3.0 (Aug 17, 2018)
Mango(external link) 3.8
mICA Toolbox(external link) v1.17
MRIConvert(external link) 2.1.0 Revision 440 (includes mcverter)
MRIcro(external link) Version: 1.39: build 4 (run via startmricro)
MRIcron(external link) v1.0.20181114 (run via mricron; older version included dcm2nii, dcm2niigui & npm)
MRIQC(external link) v0.10.0
DCMTK(external link) 3.6.2
BXH/XCEDE Tools(external link) 1.11.14

EEGLAB(external link) 14.1.1b (run via eeglab from a matlab2008a command prompt)
SDM(external link) v5.141

to be installed & tested:

PROBID patter classification(external link) to be tested

Page last modified on Tuesday 22 of October, 2019 15:34:31 CEST