Neuroimaging Software

SPM(external link)

  • SPM12(external link) r6906 20-Oct-2016 (start with spm12 or spm12_6906 from a matlab2013a-prompt)
  • SPM8(external link) r6313 02-Mar-2015 (start with spm8 or spm8_6313 from a matlab2008a-prompt; older releases can be run via spm8_5236, spm8_4667, spm8_4290 or spm8_4010)
  • SPM5(external link)
  • SPM2(external link)
How to use Matlab & SPM on psyserv01

SPM/Matlab toolboxes in use

Other software

AFNI(external link) 16.1.27
FreeSurfer(external link) v5.3.0
  • add the flag -use-gpu to recon-all to enable GPU support!
FSL(external link) 5.0.10 & FSLeyes 21-Sep-2017

BrainVISA(external link) 4.5.0 (execute brainvisa_setup before using BrainVISA-commands!)
Caret(external link) 5.65
Mango(external link) 3.8
MRIConvert(external link) 2.1.0 Revision 440 (includes mcverter)
MRIcro(external link) Version: 1.39: build 4 (run via startmricro)
MRIcron(external link) 30APR2016 (run via mricron; includes dcm2nii, dcm2niigui & npm)
DCMTK(external link) 3.6.0
BXH/XCEDE Tools(external link)

EEGLAB(external link) 14.1.1b (run via eeglab from a matlab2008a command prompt)
SDM(external link) v4.31

to be installed & tested:

PROBID patter classification(external link) to be tested

Page last modified on Friday 22 of September, 2017 15:15:46 CEST